Scaffold JGI20129J51890_10000888

Overview

Basic Information

• Taxon OID: 3300003614
• Scaffold ID: JGI20129J51890_10000888
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5156
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032562	Metagenome	179	N
F057170	Metagenome / Metatranscriptome	136	N
F058700	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20129J51890_100008884	F057170	GAGG	MTTRGLIEVFNSKNELLSRIYVHGDMYPDNGVMCEVVKHLGKRYLVNGIPPDGHFDVVNGMDNLAALVTAHLTRWYTKIIRRFSDVKKNDLAAGYVYLYPFNLDIKDTDAEYIYELRPMMDEEKLVYPGGARKVLDVVRVTAKRYEWWNGTGPTDFFDGPLRDFAKQYCKA*
JGI20129J51890_100008885	F058700	AGG	MSEEEMTADDIMDYLESAMVNGWLEDLVRSDFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTNEQKNEVLGSVIHEMALYGIEWLFKDIAYDLIYNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPNEEDKKSTAYEDFLNATGLADYIDNDELNEIIKEYLVEKVGHRLSLLSEDVKQK*
JGI20129J51890_100008889	F032562	AGGAGG	VSEEKESKGTLLSEDRLSVKTFADTNHNTTRYFAEIEVNGKRITSEKHESLDVFKDFERTVESLYRKAEILQTLSSPRAADALAEDMLNDIAELVLLTRALLDKIKSWRLWKPRSPNL*