Scaffold JGI26246J51724_1075296

Overview

Basic Information

• Taxon OID: 3300003592
• Scaffold ID: JGI26246J51724_1075296
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 629
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011937	Metagenome / Metatranscriptome	285	Y
F048245	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26246J51724_10752961	F011937	N/A	MSKNKGFFSEIKNQIKTGIGLVITAGFGLLIANMQSIFEPKEDVVEQTPTIEQTISIPPSTKDTIVISKSIKIEPVKPKKE
JGI26246J51724_10752962	F048245	N/A	QDWDTIPITIGRKTAGTELGWDVEVENTDGYVNKRSMPFNTSPTDGIYGIVYPVPTKGPITFDLTVPDNGYYVIRVLNYGGSEFLKQRKKFFAGWVQFQMDLSSLPQGVYLLHITNGQFVKTFKTIKQ*