Scaffold JGI26246J51724_1010613

Overview

Basic Information

• Taxon OID: 3300003592
• Scaffold ID: JGI26246J51724_1010613
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2967
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037743	Metagenome / Metatranscriptome	167	N
F090425	Metagenome / Metatranscriptome	108	N
F091359	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26246J51724_10106133	F037743	GGA	MSNDVNFFESNEYEDRYIEVALIDAEHNEYIYWVSLNLIPGGEDIEDNSIKIAKAKHTSLKLPSIPEDNDYEEFEPKASAYTPFSRNGNEMTFIT*
JGI26246J51724_10106134	F091359	N/A	MQYFSQIPHFGFCREGEGRVVYVLSRELAIGEFNVIEAIANKSLGKGQWSEYDPSIVETANYLIEDEQNIYGLLSINESSDLLHTFFMELLKKNIKVISINFESSAVRTINQIDNSFIKSIDKNSYIFAREYDHINSY*
JGI26246J51724_10106135	F090425	GAGG	MYIYLFKISCWSEDDVEKLRQNDLNIMMSNPENKGSWYSIYTESADFDTYEIPFDKMKIQPSNSPEDLKCNYDDAEEVYNFLIALKTEEVLYQPAFISNAISGTSFDGLYLLYPATVNGEETVCYEQFVDGEWDEGYFIGSKDMSCVGNSCAEILGISPLXDFINPENY*