Basic Information | |
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Taxon OID | 3300003592 Open in IMG/M |
Scaffold ID | JGI26246J51724_1009997 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3106 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019396 | Metagenome | 230 | Y |
F026261 | Metagenome / Metatranscriptome | 198 | Y |
F043093 | Metagenome | 157 | Y |
F048972 | Metagenome | 147 | N |
Protein ID | Family | RBS | Sequence |
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JGI26246J51724_10099972 | F048972 | AGG | MKNLGVCDTIDWDKVIKQCASVDPQFVGPSHKRGDTIPGLDPILDMWEEAGYKTVHEGGTAGWDMFIPGKQFDESVVNAWNEFYGLECNNIWISRVWPGRFAPIHWDVHDDEVNLPDCPRYHCHIGKPQWGHIFIADEEIFYNQPQGTTWEWTDRKIWHAGTNCGTQPKYIWNAW* |
JGI26246J51724_10099973 | F026261 | AGGA | MSXYFGTTNNIIDWEPIVDICKKCTTGDVNTPVGVIDRSEADAEGTLLESYRGIMNTWLDAGYKLEEIKWVDYYPGEHFDIEIQNKFAEIVNAQPLRVFVSDVAPGNNVPYHWDVEDNEEEWLAQGELKRWVCFMDKPRWGSVLILEDEAFHNVEQGKIYEWDNYRSYHAGTSMGIHHQYLFHFLGRPNK* |
JGI26246J51724_10099974 | F019396 | AGGA | MNINDWNPYLKLDPDGYPCMAQQTYEPLVSPDGKTFCKNYAFPNEYQYIEEKDRPLYTXEVAEWFFFNELTYLELFKDKPYAPEILDIDYKNRKIFLKWYGKSCNQIIYGSDIWPQGDWRQQIKEIILDQWDEGVYKLTMYPHCHYADSQGQMRAIDWYGCVPIDKPYIEEKYMQGIIHDTAQFRLEETGKAVDNVLNLETMFKRSLGTHVLWGNQDMSYIYKELFNVXIFWNYK* |
JGI26246J51724_10099976 | F043093 | N/A | MELYLNSTWKRIGISISGGADSALLAYLICSNTKADIHFTNQIRLWRTRPWQEHIANEVIDWFGYRFDNNFYVHRNLVPPEMEEPNTTLIEDEYGKMKPGNRIILRSHNEFIANKYKLDALYAGVNMNPDISIPGEMEERNQGVL |
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