Scaffold JGI26247J51722_1001323

Overview

Basic Information

• Taxon OID: 3300003588
• Scaffold ID: JGI26247J51722_1001323
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9762
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064114	Metagenome	129	N
F065112	Metagenome	128	N
F069345	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26247J51722_100132314	F065112	GGAGG	MFLTIEHNQSGELLCNRRLGPYEKLDIEALVSKEIDKLYCGELELEYADNVPNGCAEYYAQIRTRKHDSLCVWTTGDFFYKRETE*
JGI26247J51722_10013232	F064114	GGGGG	MTALEQWKELARVENLRHQLVAQPTQAIVGRNYGAKVDLMAVAFDAVKTRDAWTIKDLARKMQIKDDAAQQLLRSLVKEGHLTSRPMHGEALYEWPDRNPSKPLPRMGSRYR*
JGI26247J51722_10013237	F069345	N/A	MIDCPECSHSDRKGEVEHEQFKMTSYGVYEPFGVWKTCENCSGSGEIEAD*