Scaffold JGI26254J51713_1008755

Overview

Basic Information

• Taxon OID: 3300003584
• Scaffold ID: JGI26254J51713_1008755
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2836
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y
F078539	Metagenome	116	Y
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26254J51713_10087552	F042625	GGA	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLEGKVSEGMCNCAPPADKPLD*
JGI26254J51713_10087554	F098044	N/A	MNTTSISNSKQAVIGINSTYDTVLVIEGIILNNPMMSSLQDIAKLNKTNLCKMALMEFMTNPVSTRKLRRLFTAANDDDKFRSVMQGGQLE*
JGI26254J51713_10087555	F078539	AGG	LVSMTAIRPFTDRENFIVASTIMVVSEKMKSISRETRQSILQFIREERYPAVTDQDWKEIANGIDSHKKNIFGLMVKAFNESSEAPETFAGKSMANLDSSVKDDIESINFDELKEIVDESEDPKLREYYLTMKQLLRDYKDEKE