Scaffold JGI26260J51721_1023987

Overview

Basic Information

• Taxon OID: 3300003580
• Scaffold ID: JGI26260J51721_1023987
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1193
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F015461	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26260J51721_10239872	F004646	GGAG	MGKVNALFQDAQEAKEEAQMIYAIADVPHEDYDNFDMLNKLFHALAPHGWQNSTWKNDTCPSLIKEEIHGNACRIFVDYINPEMRESPDWGLLYFTIEDAEGYLVIQEGFEDADELISYLTKKLN*
JGI26260J51721_10239874	F015461	AGGAGG	MENVMQELKAIMQDVKEATARVSEYTMEIDRGINVNHTDESVIKQDKINNLFYCLDDARFNMDRVQESLKDIHEKLDVLLDVVEYENIAKEIR*