Basic Information | |
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Taxon OID | 3300003580 Open in IMG/M |
Scaffold ID | JGI26260J51721_1013545 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1979 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005578 | Metagenome / Metatranscriptome | 396 | Y |
F036692 | Metagenome | 169 | Y |
F087017 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI26260J51721_10135452 | F036692 | AGGAG | MQNTVHVLQLQGTGNEESAFEVAGVFTTQQQAIEKLQNINAEYVDVDFTVFTLNENARIETHTINA* |
JGI26260J51721_10135453 | F005578 | GGAG | LQNITTRELKHLCNFLTHDMNYKVELVSEEDFAYDEDGGENVYDWISATDELCVQTTQLLHNYFTKKDRTLATAFATAIDYRYDDDCINEGISEHFFDYCKKHNILDFYFKQVDAHDYDGVDLNMRM* |
JGI26260J51721_10135455 | F087017 | GAGG | MLKITNTTIEKDGTFGTNTNYTVEGTVKLANDSIWDYDGKDVVTVENIQVYTHFDDDGNDSNVDVNVTHNATWNIYTDSGFESAISNLLGFDVQFTEQGMQDDGYASMET* |
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