NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26260J51721_1002541

Scaffold JGI26260J51721_1002541


Overview

Basic Information
Taxon OID3300003580 Open in IMG/M
Scaffold IDJGI26260J51721_1002541 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6959
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005266Metagenome / Metatranscriptome406Y
F034541Metagenome / Metatranscriptome174N
F042349Metagenome / Metatranscriptome158N
F057435Metagenome / Metatranscriptome136N
F085576Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
JGI26260J51721_100254112F005266GGAGGMSVHIRYRFYKEKDHYLEDERMTRGYTLVEGDEPTPFHVVLKEFYKDMKNRAKVINIWRTKSGEANYRMEEEERLLWE*
JGI26260J51721_100254114F085576AGGTGGMKQWYIKLKAGNFENGYYEVGHNFDLVLELVKTEFNKDCIALGFTPVTSEIVYMEQNEI*
JGI26260J51721_100254115F057435GGAGGMLKNIERQIMLFTEATGVTERAEVIHGTLFVKFHNPEDKEWFRISLKNFCKIFINNDTGVNANEVGDEVAYDIVPAKDETTWNTTETQESKISTHIDLQEGK*
JGI26260J51721_100254117F042349AGGAGGMMEFEIGDKVKVIGQSMVGEVIDIDYGENIVTISDSYAETNNSEHQYKADELQLLTMDHDEDGDMDSLDEMRDMEMRDNGYKWDDWN*
JGI26260J51721_100254118F034541GGAMKTVESMTWDDLQSALTEYQVNGNGGGMGVKDIQIKHSIEDEIAWRLEKGYTDLTPREIEIELLEQGKIEERYL*
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