NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26260J51721_1000663

Scaffold JGI26260J51721_1000663


Overview

Basic Information
Taxon OID3300003580 Open in IMG/M
Scaffold IDJGI26260J51721_1000663 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15378
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F008577Metagenome / Metatranscriptome331Y
F021302Metagenome / Metatranscriptome219Y
F023446Metagenome / Metatranscriptome210Y
F065127Metagenome / Metatranscriptome128Y
F078296Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
JGI26260J51721_100066314F021302N/AMQTLIQKLKKSKRKRRHVYLLQDRIAELNHEIVSASFKSEYSYNKNITVVRGNIENKAKLLKKYNRRLKLIIY*
JGI26260J51721_100066321F065127N/AMSLTTSAIHQRASNKAFAKVEMCQIIIQQDEHNLKTGNYGADITLEQAKLIAEGNKIELEVWNYIXKLIETNE*
JGI26260J51721_100066324F078296N/AMSKITKTFEDKSYSLSTGLTKDLGLFKVSATVWSCAMYNERKKVYEHEINDVELAYYINDQYCKYQGFKELYEKLYGVDSFKEFEQDITYEFQEAYHDQTTLK*
JGI26260J51721_100066331F008577N/AMNLTWEEIKDIANLLDEIVGNHFHDAMYDIIFDRESDEEVEVTDEDVLAIKEQLKRIL*
JGI26260J51721_100066333F023446N/AMTKNVMFINNLCKLMGGDRFFLCDQYDQDELFEMQDGIAKLIAESANDGLGLAKFMADQFPSTFKTEYTDVE*
JGI26260J51721_100066334F000918N/AMRYLTNNEAWDEVTNAFNESKRRTKICQSLFGQDNLIGLNDEQRDLFWETI*
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