Scaffold Ga0007409J51694_1020085

Overview

Basic Information

• Taxon OID: 3300003575
• Scaffold ID: Ga0007409J51694_1020085
• Source Dataset Name: Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus massiliensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016526	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007409J51694_10200851	F016526	AGGAG	MRNRKYLIGALAGVIGALALSGVANAAVTGQTLQTTLSPTKQSAKQFGGVSLHNIISTTIDNPATTQSPKTTVFTIDPNVKFTAGNIPPCPLSSIQGKFTAQAQAACPQSITGGGSVEVNNGAVGGTVTFFSGGPNTIYVQTDIGPGATSLTIIGTIQGRILTFSNIPNTPGLILTKFDTTFNKRKTGKKSYYVSARCKKGKWKTSETTTFYSGEVFTAAAAPMKCKAKKTK