NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0007410J51695_1081290

Scaffold Ga0007410J51695_1081290


Overview

Basic Information
Taxon OID3300003574 Open in IMG/M
Scaffold IDGa0007410J51695_1081290 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005082Metagenome / Metatranscriptome412Y
F096396Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0007410J51695_10812901F005082N/AIRTDISKLAPNAFTPDENVERSMSVYMVFDLPSDGFTNAEALAAYVGFKTLITATSDALVTKLLGGES*
Ga0007410J51695_10812904F096396AGGAGGMKSLTSLWSITANELAVRCCTSAIRDITTVSERAEHEGLSFFAITLASYGKAIEKWLDQGFVVPSDCPSFGRNRRTGLPAFLQGFLGRVFSTTSGVLLDDPDIEAVYAIRQLTLSFSKIALPHDF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.