NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007424J51698_1105210

Scaffold Ga0007424J51698_1105210


Overview

Basic Information
Taxon OID3300003572 Open in IMG/M
Scaffold IDGa0007424J51698_1105210 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_40 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002655Metagenome / Metatranscriptome539Y

Sequences

Protein IDFamilyRBSSequence
Ga0007424J51698_11052101F002655N/AKDLDTETMTEVKGGIALTAQVVPTNVQSNELLQSFNVGSHGPVAIGNDADQSNYSSQDTVAPVGSLILGGDFLRRIP*
Ga0007424J51698_11052102F002655GGAGMKIENLSKDLDTEAMTEVRGGVALTGQVVPTNVQSNALEQAFNIRAGGPVAIANDADQSNDSDQESLVPVGSLVAPFLCSII*

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