NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007417J51691_1101744

Scaffold Ga0007417J51691_1101744


Overview

Basic Information
Taxon OID3300003544 Open in IMG/M
Scaffold IDGa0007417J51691_1101744 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001011Metagenome / Metatranscriptome806Y

Sequences

Protein IDFamilyRBSSequence
Ga0007417J51691_11017441F001011N/ATDSQGLLQVDTDLLSKLQSVLLPVLVDALKYIPVPKISSNDHDREFWLDKVVLCSYDIIPQNIKFHLQADSEISLPDIETKGTRTYLVIKLEKLLTELKDMEFYYRKKTFPELEDHGRVTFRIKGNGAKLTFTYKLLQGPQDAVPKISQGYASFDISEMEIDFDKSTLKHPLIVPMLTQLFKTQIRMEIERQVEQNLIKFMDQLGERLTSSLKEMNKPFHYGLEAAKKAVKSSQLAQVYEKR

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