Scaffold FS900DNA_10986487

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FS900DNA_10986487

Scaffold FS900DNA_10986487

Overview

Basic Information
Taxon OID	3300003542 Open in IMG/M
Scaffold ID	FS900DNA_10986487 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	546
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Axial seamount, northeast pacific ocean
Coordinates	Lat. (^o)	45.87992	Long. (^o)	-129.80294	Alt. (m)		Depth (m)	1917
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065678	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
FS900DNA_109864871	F065678	AGGAG	MSKRIYHLTIEYDHDTEEIEYILETVEHVDDGHVQLTEIGTVDLEKYFDKETLKEILQCYEVGEA*

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