Scaffold FS896DNA_10254352

Overview

Basic Information

• Taxon OID: 3300003540
• Scaffold ID: FS896DNA_10254352
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 760
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.926575
  • Long. (^o): -129.979479
  • Depth (m): 1507

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F032307	Metagenome / Metatranscriptome	180	N
F036732	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
FS896DNA_102543521	F032307	AGG	LVVQKLLLQEGLKRTKQYSVSVLGYDFVGLAMRLGLFLTVGVLIQAYFTATITGSSWLNIVAGFFNIKFPDTLPEWLTKLFTTGYNGI
FS896DNA_102543522	F000730	GAG	LVNEFIPPEIIPLVWFSCIAVTIYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVKDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLSFVKAI*
FS896DNA_102543523	F036732	N/A	TAVMKAFYESGISLHLHPDLSHADGVFKYKKDRVSMLGQ*