NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FS896DNA_10161883

Scaffold FS896DNA_10161883


Overview

Basic Information
Taxon OID3300003540 Open in IMG/M
Scaffold IDFS896DNA_10161883 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.926575Long. (o)-129.979479Alt. (m)Depth (m)1507
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072515Metagenome121Y
F092719Metagenome107N

Sequences

Protein IDFamilyRBSSequence
FS896DNA_101618834F092719AGGAGMENNQNLSPMQNEKKTNTDPCPVCKEELYLNEEYTQRVGLINDFEEVIGWLCPHCKTEYDTDTKIVRFLGGSSIRGEA*
FS896DNA_101618835F072515N/ALLKTEKIQKMVKEEIREILDDEGVTDNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTDEKKSEQVTVWAGFSPEQLEGVGKDGKQPELIAHAEREED*

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