NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FS896DNA_10101154

Scaffold FS896DNA_10101154


Overview

Basic Information
Taxon OID3300003540 Open in IMG/M
Scaffold IDFS896DNA_10101154 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.926575Long. (o)-129.979479Alt. (m)Depth (m)1507
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094411Metagenome / Metatranscriptome106N
F099879Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
FS896DNA_101011543F094411GAGLTVKQSQDIQNSQAKLISLIDRDYLTVKEVFKNTHTLRLTKYGKNLLKKQYDAYQFDSPSLSVKNLINLLRKMNYPYYVDKKIIVLFTEKDAFVTKLAGAQGWLDGK*
FS896DNA_101011544F099879AGGMANRNKRVEVPDTIMVTCTDNGQDVEVEYISQYNNIIRTSLQGIPLNFYHHRANIYVANAHGREFVMKL*

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