Scaffold FS896DNA_10012245

Overview

Basic Information

• Taxon OID: 3300003540
• Scaffold ID: FS896DNA_10012245
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14101
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.926575
  • Long. (^o): -129.979479
  • Depth (m): 1507

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038239	Metagenome / Metatranscriptome	166	Y
F049629	Metagenome / Metatranscriptome	146	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
FS896DNA_1001224513	F049629	N/A	MKDLVEFKNNQIEALQNKNAELEVRIAILETWIFELTDKNCPNDYKKVIRTELLKNN*
FS896DNA_1001224523	F103244	N/A	MRVEDITTYENDKSRITVYMESDKEGNYHFLKHIEEVDSDNEQLIRYSLETFMAEYKMIQKFVEGNLIKDRKFFKQVLNLKAKQLCQK*
FS896DNA_1001224526	F038239	N/A	VGRKTNISKKNWNSFIPTYTDKYTKEMDEEGLKVIKWSMLDSPDKLGSGKMFMETEPVIILDTVFFRERLKGAILLGYTSSDYANKIGVPENSEHRTGKAIKFRCINPSHRFRLVRGLIQYGVERIKLYDNSIYFDTENYLHKSELSFRHF*