Scaffold SACTD2sed_1001295

Overview

Basic Information

• Taxon OID: 3300003512
• Scaffold ID: SACTD2sed_1001295
• Source Dataset Name: Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2406
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Macrotidal River → Macrotidal River Microbial Communities From The South Alligator River System, Northern Australia

Source Dataset Sampling Location

• Location Name: River
• Coordinates
  • Lat. (^o): -12.2376
  • Long. (^o): 132.4096

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002197	Metagenome / Metatranscriptome	584	Y
F002907	Metagenome / Metatranscriptome	521	Y
F030378	Metagenome / Metatranscriptome	185	Y
F046343	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
SACTD2sed_10012952	F046343	N/A	MTLKKTGTEVLTKDEMKELIALKEAITYDPHTVSAQKMEKFAELMVRSLEGKESNAPQ*
SACTD2sed_10012954	F002197	GGA	MYSLKILAPFLAAMCLEGATTGQGDYCVVDNNPPSVVKYYETGKSCYVNGTFYSKCEDRLNGSI*
SACTD2sed_10012955	F030378	AGGA	MTNEYLSSDFSYKKYSLEQLDNWVNDALNCEDLTPQDIYDTVIKCVDESVEYHKKYLTKSIELLSLLKGHRPNVFDASAHEFNDFWYEQDKISQHYSEEDLNAMCDAAADKEKCREYNLXRKQVVMSGRLECNV*
SACTD2sed_10012958	F002907	GGAGG	VKINPYSIFMKWRIDEPTPLEILAEKVQQLEDKVRVLEECNVEQTNALYECWNSLDARIDILAEYKTDV*