NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ51221_10086519

Scaffold JGIcombinedJ51221_10086519


Overview

Basic Information
Taxon OID3300003505 Open in IMG/M
Scaffold IDJGIcombinedJ51221_10086519 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.53312Long. (o)-72.189707Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013689Metagenome / Metatranscriptome269Y
F016720Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ51221_100865191F016720GGAMPPVLFDSSIYITALRMGDEAALALRRLAADSPVWLSSVVLEELYA
JGIcombinedJ51221_100865193F013689GGAGMKSALFTFLLLVGAAQAQQNFLAASPLPNAPSPHKFWSRENKIDFSILTGQITVDAITTQRGLSQGFTESNPIMRPLVTRGIAGEAAASALGLGFGVGTAYLLHITRHYKAERIATRTMIAVEGGFVANNLVRIY*

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