Scaffold JGIcombinedJ51221_10013424

Overview

Basic Information

• Taxon OID: 3300003505
• Scaffold ID: JGIcombinedJ51221_10013424
• Source Dataset Name: Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2733
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.53312
  • Long. (^o): -72.189707
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000702	Metagenome / Metatranscriptome	929	Y
F031604	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ51221_100134244	F000702	GGAG	MRKVIRGYAKDKNLNLILIGTIPVPHSEHKRSPGARQDKRYLVRQGATIFKKETFR*
JGIcombinedJ51221_100134246	F031604	N/A	MELGLSRGEFGIFVFVGTNTRPPRFRFIEAPASGAFVVVTAMLETTDFFQDQAKQCRKLAADAHDKNDREFWLRLAHRWEGLLRAQQHDGAGVETVQKLRFERPIFAKRRRAA*