Scaffold JGI26242J51144_1022288

Overview

Basic Information

• Taxon OID: 3300003500
• Scaffold ID: JGI26242J51144_1022288
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005848	Metagenome / Metatranscriptome	388	Y
F016399	Metagenome / Metatranscriptome	247	Y
F032859	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26242J51144_10222881	F016399	N/A	SIRRVARRGSKGIGSSLKTGVIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGLIGGAANLVLSGGLGQLGGMFGGASTPQQEFGV*
JGI26242J51144_10222882	F005848	GGAG	MALPVQRTYTATIAALNAPVFMVDQQTLQNNFLTLTPNVLQDCVNLVDPAATQLLQYTLVKNGNATSVRAFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTAGVLFNGSILVRYGSPLN
JGI26242J51144_10222884	F032859	GAGG	MSFGGGGSGGSSTVAAHTHNSTLSGDGGALSSTLTQLDTSNLYTRIII