Scaffold JGI25930J51415_1012163

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1012163
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003690	Metagenome / Metatranscriptome	473	Y
F014129	Metagenome / Metatranscriptome	265	Y
F029439	Metagenome / Metatranscriptome	188	Y
F093873	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10121631	F093873	AGGA	MFSLNYTVGGSSTTLLVTSEEYANEFLDLVSQTRVIDTVTLTELPNYKPSKRVVYATTRSWE*
JGI25930J51415_10121632	F029439	GGAG	MTNIVLEPSHPMASSNTGDNRLFRNSVGNYMSRKAYLELLASKEGCVSHRYLSPNESQWLLGVR*
JGI25930J51415_10121635	F003690	GGAG	MTINGFELVISNEYGLEFDSFLGAIYLPWHTIILTTLAVIAYKVYKRFYK*
JGI25930J51415_10121636	F014129	AGGTGG	MTTLSIREITLENVSADEANLIVCVFCSDYSSEFYCVKCNEYKGLMTLGEWLAYTQESWVM*