Scaffold JGI25930J51415_1003339

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1003339
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3545
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012663	Metagenome / Metatranscriptome	278	Y
F036236	Metagenome / Metatranscriptome	170	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10033393	F080900	N/A	MKKFLSEIHALTWTLAGTGTVLITLSGKTRLLGWYISAIALIIHLLGVYFKENNE*
JGI25930J51415_10033394	F036236	AGGAG	MNKAKDIAGRIVALFLTNALGVVTGAAIIAPDLEVWKSACIAGAVSVFKVAEALAKSSIDGVLTKDEIDAAFGATPKKIAAKKAAKRVAE*
JGI25930J51415_10033398	F012663	AGGA	MKSFRCLECLTEFEADELPRRGSICFKCHVKSIRLGFTHGQEDFHGPTVRERQRQTVEQAKINGYNAEPVTNWM*