Scaffold JGI25930J51415_1001126

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1001126
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6065
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10011261	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWDQNTFWNLTFQTPEGVDINLTGVTVSAQIVRRQLTNIIDTRNGLTFDIANYRITPPAIPLTIANFDAVNGSFTLVIDSGAWSLMATDPELNINATDCVGYSGRVKVSFPTTGSTPADDL
JGI25930J51415_10011264	F023109	GGAGG	MIRQATRYDIPRLLEIVEAYAYENPIKILGEPCNHFPRHVEELLFSIIQGKGFVYIDNHMRGAIVAIKQNNIWSPKVRELHELLWWVEPAHRNGTIGGRLWKAFDSHAQKMLDLGNVDLVSTSISANGPFIDYTRRGYKAVGASFVKE*
JGI25930J51415_10011265	F014737	GGAG	MTAIYAVSGSQINHAEFVKLTVGTAATVYTFCNAAAPITVGGITFSNLGALLNVGDVQRDIKATSDDMTIQLTGIDPTNVGIILGNEIKGSLVEVWRGFFDTNNQIITTPTTQFFKRYQGIINSVSITEDFNTELRQRIATCSIACSSMRRILENRLSGMKTNQDAWQFVYGTSETSMNRVAQISNTFFDFGAPPMTQTQASETTVTMDSGGGGGGDAP*