Scaffold JGI25930J51415_1000130

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000130
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14768
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002794	Metagenome / Metatranscriptome	529	Y
F010535	Metagenome / Metatranscriptome	302	Y
F085392	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100013010	F001872	N/A	VTVAKAKPGIPNARDYIGNADGPAPKPRAGMDEWIRQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPKAGRLNALSFIDVVVANANDLGVQCILDYFPKEHGRAWRCDRYAWQKYTKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIHQ*
JGI25930J51415_100013020	F085392	AGG	MSYVIASSKLGKIGELYEPRAGINVAALLAGGFIVEAEVSTTEEEKPAKTKSKKASKE*
JGI25930J51415_10001307	F002794	GGAG	VSEGVSFNQGELTEETRKMVLESSASASHTMAIFNLMDDIMAISKNPHASIIRRLRAMKNQLSLNEPMPLHDVTTLDLAIKALEAHS*
JGI25930J51415_10001309	F010535	AGG	MSEPQIFNYSVYTGVMDNGQEILVQIFTEPDTGKYLLGQIAFRSHASSWGVPIPLEKK*