Scaffold JGI25930J51415_1000052

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000052
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21106
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F040522	Metagenome	161	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100005222	F040522	N/A	MANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTAPVVAPKAKKAEPEVWDENKVVSDLAANLSQFFRVQQQLADHIREEEEKSKSVYDPNQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGVACLVFVLYLILFFSLLIMDRKVRWGF*
JGI25930J51415_100005231	F002764	AGGA	MKEPEDEAFEELAKRQGDWGLQGSRKHQIIRFAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRGMKK*
JGI25930J51415_100005233	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSSPETALVILKSVALDALLAAQDIEQIGVNDEQVNWSRP*
JGI25930J51415_100005238	F046258	GGAG	MKLLTIAIKRVLSYFEIVISQPSLPILLKDKTPARMTLPTISITDPKFVYQSAACTDITQTFQKAKDERLQRLRNNADSNRAKDQSTGEQVSKQKLRRVHG*
JGI25930J51415_100005239	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE*
JGI25930J51415_100005240	F009140	GGAG	MRLNLTHRTILKRLSGGPRTMLEMTHSATDNNAVSYHYAKYLPELERFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVREPYDGKELRRNVFRRGCYDFLKYPSRFGDNLFYHKGEQA*