Scaffold JGI25930J51415_1000019

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000019
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28707
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F014617	Metagenome / Metatranscriptome	261	Y
F080030	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100001916	F008130	N/A	MPYGRSTGDKGRCNMADAKTYVYEVYTTHLDTEQMVLVQIFRDPETDKVLHAQIAFKSAVGDSWGTPYQLEKK*
JGI25930J51415_100001927	F014617	AGG	MIYTIASSKLGIVGDPFIPDEGINVAALLSGGFIVEQSTPKPKKPAKTSTDTNEEI*
JGI25930J51415_100001939	F000722	AGG	LAGKHGQAHMADIPYTDIGITQETREAMYPDTYSDKLGKVFTNLIDEIVRPNHVPSQVPDHSILLDELVIMYDAFMTIGGEQNRFNASVLKAAINVIRAL*
JGI25930J51415_10000198	F080030	AGG	MRIKLKLTRTTNAEPEYLYTTLFSIALWEEKFNKKPLDAQNSGFRDWSFWAYTLLKVRGEKLPDDFMDWLKENPEMDVLPEADVTNPNPTDAALIDGN*