Scaffold JGI25930J51415_1000011

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000011
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33205
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (17.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100001113	F008073	AGGA	MKKTILTHLEKMEFVCGLKQFKEYKIEEAEQLLDCLNKLFSSFGWMTETRVDYILHAGLRGQYGDFYHVNEKTVNGWISQYYQHHQSQIVQEVQAANNKEKEATDEEIAYWIEIGKQIFRDNYEYAKETGHCKDLAEWGINWFNKFQEKGILKPWKFPVDQIESDVRREMRINSKWIDESSVSAKAKNRIWKMFILQSIQEKRNLDKLI*
JGI25930J51415_100001121	F047062	N/A	MKYNSENYYDQEIIFTYEGKDYIWIGDYSIDHTYEEESEFAPAYGEMEVTIDYTSSLSCYDEANVIPTRSILMAVELEIERNY*
JGI25930J51415_100001122	F008081	GGA	MEERQIINPFGYGNASRVIDENRKPADWWTEFLEINLEVVENEFYVLFRNGSLVKKGRSKFRSSQYLLGDRFKSFRQTYERL*
JGI25930J51415_100001124	F036704	N/A	MWLEIDVMLSGSTMDWKELGLDVKHEFVRRMVRLDDIAYVQELVHDIQVMYFYDKTSVLIRGEYQRIRDEILHLEDEED*
JGI25930J51415_100001125	F001775	N/A	MIDSEKTKIAAVSFLIGAIVAIILFPKKEIETVYKTEIKKESDTIYVASTDTIYIPKTRIKTQVLRDTILIDFKPKIKAFETTFPFDYGSTKVSGEVLGEVLKMTAVNDYTLPVVTNTITETKTETIIKKSKGIYLGAGVNSMLKPSAKVSYLDNKYLFEYQYSPMDGVHHVGVSKKLF*
JGI25930J51415_100001132	F029443	N/A	MTLSELVAKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVIRPSQYATSVVRYRAVLLFADLLTEDKSNRLQVQSDQMLVALDVLAKLKLDTAYSFNPSTNANMEFFQERFDDFTAGVSIDIEISSPVPLNLCAIPTT*
JGI25930J51415_100001135	F020344	N/A	MVIIEKGEASTIYIALFDKRETSSDTYTFLFQHEVTKEEVTLSLADVSQSKERYSEFSILEASFQNSTVGFWRYYVTQTGSGADIIATGKMELIATNLSTAGVVRYNGYNGNYKTYTV*
JGI25930J51415_10000119	F005529	GAG	MPRMLPASKPDYSLEIRFKNSSGEWSQWINKGKGLFQTIEIVQHQIRLISAPHRGKEIEVRFEWNGWLCDYSGQPTGEVIRFK*