NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25925J51416_10032309

Scaffold JGI25925J51416_10032309


Overview

Basic Information
Taxon OID3300003497 Open in IMG/M
Scaffold IDJGI25925J51416_10032309 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F079951Metagenome115N

Sequences

Protein IDFamilyRBSSequence
JGI25925J51416_100323091F079951N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYP
JGI25925J51416_100323094F000922N/ARKLPEMRMPKEVWKQASSLYLAGMDWDTIAGKLGVNKTTLSKRASLEGLTKVKREMQTVCINKKTESLESLSAIVRNRLAADAAATLERIDSYDLDGIKDESVRESILGSVAKRSALVFGWSEQSEATSVSINLLGSMPDRFAETVVTK*

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