Scaffold JGI25925J51416_10000023

Overview

Basic Information

• Taxon OID: 3300003497
• Scaffold ID: JGI25925J51416_10000023
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27876
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F051120	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25925J51416_1000002312	F051120	N/A	MNDLPNFAAWNNENLAKFATDSYRKMQEQQDHIEQLQGDLKDAMMEIRRLFWEASK*
JGI25925J51416_1000002317	F014133	GAG	MNYLKNVWEWLQNHWVMPTPAELVAEELIQAQRTKLRHQSSMEYHTAIVAYNVARIKRLEGLTAKQEVVE*
JGI25925J51416_1000002320	F011223	GGA	MSKIKIQLVEDEETPSTWEWMWSSLMTFIKCVGVFAAICVAIGYFSDTKAQSKQCEPSKTVLARSIFK*