Basic Information | |
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Taxon OID | 3300003495 Open in IMG/M |
Scaffold ID | JGI26244J51143_1010832 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2176 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000659 | Metagenome / Metatranscriptome | 952 | Y |
F032311 | Metagenome / Metatranscriptome | 180 | Y |
F060348 | Metagenome | 133 | N |
F076495 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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JGI26244J51143_10108321 | F060348 | N/A | MKRFKEYLKEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTD |
JGI26244J51143_10108322 | F076495 | GAGG | LRVMEQITKMKRFKEYLNEVRFQKVTVKDKSGKSHTQQTRIRPDTTHVAILHYDDIPATDLSSAVIAHTDLSFGSIDSLDKIIVHAKKKFDLKKVEIQKLDKKYL* |
JGI26244J51143_10108325 | F000659 | GAG | MKTFSQYLEEANSKYIVSKNPSDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISDA* |
JGI26244J51143_10108328 | F032311 | N/A | FTFPSPNSDMKIQVFLRKMTPSKGQPKGMMAFNYQFEDK* |
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