Scaffold JGI25923J51411_1010370

Overview

Basic Information

• Taxon OID: 3300003493
• Scaffold ID: JGI25923J51411_1010370
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020322	Metagenome	224	N
F043821	Metagenome	155	N
F057201	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25923J51411_10103704	F043821	AGGTGG	MSIMTEEDYYEIKVYPKGNRIVLRFVGDCWDKYNWEMTYNSYVAPLVRRYSNDWITWGDRITLTHGYYVWTWEPRALDIKGDG*
JGI25923J51411_10103705	F020322	GGA	MNDQDQIWNAFISAMPAQDKARHDLENFQAKLLKNALRELEEQNLKILELSAQIVLLEEMLQGYSSLLFDVTTDRDRFRDDWKAMVKDSSRWRPA*
JGI25923J51411_10103706	F057201	GAG	MHLLGKLIASAILVGIITLVIEAIIYEREVAAAIRKDKPFYE*