Scaffold JGI25923J51411_1004016

Overview

Basic Information

• Taxon OID: 3300003493
• Scaffold ID: JGI25923J51411_1004016
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3230
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F007688	Metagenome / Metatranscriptome	346	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25923J51411_10040162	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGIKSKTDIVAALAEEGVTWSVYQKTIKDIEDATDEFNEDAEEILPRFNPDAQPEDTVLVRMTRDNFRYDIIGFTFTKEHPFIAMTEDNAQEIFDKEEGFRLATPKEVQEYYN*
JGI25923J51411_10040163	F057380	N/A	MAEIYVNSNSPIKTKIYWEGELITPSSVVTAKVYDVTKDPTNVILPTTILTTINATAVETDIGTYQIVLPFSYSSYPRNFKIVWQYTVYGGAVGTHTTLANVVTPYININEEIEDLNFGADPSDPNYKTYANLQSAERYARKIIEDYTNQDFYLYAGEESIYGNESDTLPMPSKVNKIYKIYSNDILLVDNLSTPKVNNWLYDPIVSETGFGIRVNRANLLDNVVYVANGLVPPTITDTFYGVFSKDVKYRVVGQFGWESVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASKGTGNLYVDQLLQPYVITQMVLI*
JGI25923J51411_10040165	F012456	GGAG	LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKTTIFTQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPTARLFDLHLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKKRYVFANKASVMEEGMPVVIRPRSAERLVFELDGATVFMPKGSSVTVKRPGGKAATNQFALTYGRFFGGQLVNSSIKSSGFQRIFNAKIARALNVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL*
JGI25923J51411_10040166	F007688	GGAGG	MTVDYKIDAMFELRKFLWTQLKLAGMFDQNDYYSDNLGTEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDVTELYEMRNLMTDLFRRMD