Scaffold JGI26245J51145_1025610

Overview

Basic Information

• Taxon OID: 3300003492
• Scaffold ID: JGI26245J51145_1025610
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_200m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062676	Metagenome / Metatranscriptome	130	N
F070005	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26245J51145_10256102	F062676	GGAG	MKVKGKRIINSEDALEFANSIRGQYIISQALTIANGVLETYEIDDDVMRAEPSNRADMEFLLKAFPLYGIHEQANWKEDDDEESE*
JGI26245J51145_10256103	F070005	AGGA	MKKANKRKEPQRYRLNNISAKEIKDKYPDKIIDAYAEGGRLVLVLDNCRLKFDERVKQQLKNKYGAIHTGKLVESS*