Scaffold JGI26245J51145_1000953

Overview

Basic Information

• Taxon OID: 3300003492
• Scaffold ID: JGI26245J51145_1000953
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_200m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15391
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035724	Metagenome	171	Y
F059474	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26245J51145_10009532	F035724	AGG	MGEWGNAMRFDYPTVVSATTSLVFNNNPESPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDESMRISEIFKDRLYRATFTLLQTA*
JGI26245J51145_10009535	F059474	AGG	MAFKAIDRNEVIEAVSVDDPAIDQNNSDIEAYKDSHDIKHLSFIEGEQPTVFHIGTISFMKFAEIKDKHISFDLGGDGQEIKTNLFGLTADALRYSLKKADNLPFKIKIERNRLSDTTMDKLARLGIVEELGNVALNVNGFGDEEEKK*