Scaffold JGI25924J51412_1003902

Overview

Basic Information

• Taxon OID: 3300003491
• Scaffold ID: JGI25924J51412_1003902
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2894
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011208	Metagenome	293	N
F065536	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25924J51412_10039021	F011208	AGGA	MTEEEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVGRSQRERWDKFRRERQTEA*
JGI25924J51412_10039028	F065536	N/A	MDEISAPPSAPIEKAKNGRDIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLNVTQDVTHGLSSNLASLLAGIAGRKKITVTPEKRQIESGHNYIDVQPVATKPENHLSNNKYCINKTNSVEQQQDAQ