Scaffold JGI25924J51412_1001980

Overview

Basic Information

• Taxon OID: 3300003491
• Scaffold ID: JGI25924J51412_1001980
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3880
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014487	Metagenome / Metatranscriptome	262	Y
F031026	Metagenome	183	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25924J51412_100198010	F043823	N/A	DPMRKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELAKEKRR*
JGI25924J51412_10019802	F014487	GGA	MRLILLAFLFSSCSPRPAENTGLPNYDMMQAAEDAGKAPSK*
JGI25924J51412_10019805	F031026	GAG	MPGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNPPCPQAYRDLFAESLKALSDSLAETERERARQ*