Scaffold JGI25926J51410_1016572

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1016572
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1477
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10165721	F009679	N/A	MALIVLSELKAVLGIGDIYADSIVQECADAAENIILSYLIFDDVAIKEVSLTSNVARFYCYDNTFVVGQVLTVSKCGSPFDGSRTVTNVGTENGVTFFEAAVTNANITRRMVIPSGRALLTSQAALYDTTPEIREAALAVASDIFITRNGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRSYLG*
JGI25926J51410_10165722	F009746	GAGG	LANLVSIRTALSDSLAAAGRVVYSYPNENVAVPAIVLVPGSPYISVASIGTGRLHIRFDITVIVNAADNQAALANLETLILSVTNSLSNNYSLLGGWSQPTVQQIGNSDMLISQLSIELVTTN*
JGI25926J51410_10165723	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAAKNSPDSPLSFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFVVEDGSVTRA*