NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1015934

Scaffold JGI25926J51410_1015934


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1015934 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1512
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y
F036110Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_10159341F036110N/AMEILLFAATVAVSAFGFLISREMNRTSEELKLLRQDVFRLSVDLAKLQTRLDDLI*
JGI25926J51410_10159342F008615N/AMNTPNTFGAKMFTRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT*
JGI25926J51410_10159343F016114GGAMVNRYWAAAFFDSRDVETINDMAAMARRQLICVRELQRDELLRLKMKYPHLTTRD*
JGI25926J51410_10159344F005775N/AMAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNAGKLDNVVTKELDTYTTHHLKNLLNTNEQP*
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