Scaffold JGI25926J51410_1012297

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1012297
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1756
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10122972	F048101	AGGAG	MTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASIADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC*
JGI25926J51410_10122975	F062446	AGG	MIFNPVRMIAFILIVIAWILMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY*
JGI25926J51410_10122976	F082109	N/A	MWTPIEIFILSFLLNHSPMKSERLSVKEVIENREARLLVESVGLRNDF*
JGI25926J51410_10122977	F048121	N/A	TTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK*