NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1008509

Scaffold JGI25926J51410_1008509


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1008509 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2131
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F079788Metagenome115Y
F098688Metagenome103N

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_10085094F098688AGGAGMSKRDLALDSLTRICEIQQRLINQLIAMEQNSYARGYEDGMAAQAEVDISLNEIASGESK
JGI25926J51410_10085096F079788GGAGMDDDEIESWATIALGLIASIFFFIGLASVVAAACMAWGYYTYEPICGSIAALFTQECKLT
JGI25926J51410_10085097F027776N/AIYCDPFWPGLRYSPMVVRMMNPLQVEIAKTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETTQRRLDQEMEILREELKATQTELAYAKAN*

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