Scaffold JGI25926J51410_1008392

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1008392
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2147
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10083921	F056556	AGGAGG	MKKQIVTVSCQLPEWFEKHSLPRIKEASTRWGADLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQXHWGRANEMILSQALLGSVRWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSVRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGD
JGI25926J51410_10083924	F068578	GGA	MESIMEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASNVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDSSGETCIDHLERALVRAVFTLYKAKEGKIH*