Scaffold JGI25926J51410_1007733

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1007733
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2242
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10077331	F096610	N/A	MANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLR
JGI25926J51410_10077333	F049419	N/A	MKLPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIQEDLDRESDEVEKQYEDLNKKD*
JGI25926J51410_10077337	F044916	N/A	MGRKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRVFAKTSLEILYKDNPNLFADHAKLKLKKK*
JGI25926J51410_10077338	F064403	GGA	MINPRAKILSDLKKAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF*
JGI25926J51410_10077339	F036564	N/A	DLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLANWIRVSEDKNATEDMIPEFLLDKEND*