Scaffold JGI25926J51410_1007069

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1007069
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2341
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F034467	Metagenome	174	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10070691	F006110	AGGAG	MPRPKPPEPITFRNIRMSDRQWIIFNHFGGAQWLREFLEKKDPFPKKYYEGLKNDNRN*
JGI25926J51410_10070693	F034467	N/A	MLAKEYEMNEEIKYSSRAIPLRGCNDPKFKYFSAANTDIRRTWRKARLLIRITKGAAYESRT*
JGI25926J51410_10070694	F080867	AGGAG	MSMNTLSLSNVVVGEDLQKTMDKEGFKLSGVYGMLDPVVSRLASLNPLWTFVINNSGLGTGNNRVASGFQVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRTDSYRTVDADKAILMAKKMFGKMNPNERISKAKDAAERVVSRASWNKERDRTLHQGNIKNEMLVWAETKGNALFMEYLKVEAIPSLRHKVTTSMEKVELLDTEMKTIERVQQDFSKNKTALVVKDTGKYLVKIGDKVDLYDDNTLPVDMRMKIGMLKLVEDEHYLTDIGCKVSSEIFVLLVDLTNVSEGV*