Basic Information | |
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Taxon OID | 3300003490 Open in IMG/M |
Scaffold ID | JGI25926J51410_1006853 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2378 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008812 | Metagenome / Metatranscriptome | 327 | Y |
F011214 | Metagenome / Metatranscriptome | 293 | Y |
F057320 | Metagenome / Metatranscriptome | 136 | Y |
F086678 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25926J51410_10068534 | F008812 | GAGG | MIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYQTTPQPYQVESQTSVASSNRSQGASQYYYGQSPQAYANPIR* |
JGI25926J51410_10068535 | F086678 | GGAGG | MSKYYIKCGTLEIIYSCNKCPRDAAMDAIWETNENDTLDEHMYLDERGYRDYVTADGHTCVLHTSHILKDAGWSIE* |
JGI25926J51410_10068536 | F057320 | AGGA | MSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENEQEAKFAHRVQKHLAQFDLAPMAYGDVGMIRKYDGELTAYGYLTEVARPMPNCRDEDCDGECFQSECSNGTTIDEVVYDLGEHGLEYTDSHKGNFGYVRRNGKRVAVVIDLGIESFGEWDESIYGEFDYDADEDVDSYGACNCKECQKFREEQ* |
JGI25926J51410_10068537 | F011214 | N/A | VITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASIHDDNDMGEALAQGFKKFAWCDSDMKFAPKRPKSKAKAEAWRQALPKLVVINATKFVVCPEIRRGRAEITCTGTKDSIACDLCVRGLGNVLFPAH* |
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