Scaffold JGI25926J51410_1006669

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1006669
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2409
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10066691	F026209	N/A	MYDDNIGEWRNVTEPAIGGIKWQKRESLGGETQSAYYDHSYYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDDEHIKVEMCYHIGD*
JGI25926J51410_10066692	F102437	AGGAG	MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIISIDRCNTINDLQRLFYNALLKFEGMGVI*
JGI25926J51410_10066694	F036073	AGGAG	MNETTTETDTDTMAPIAPYDADMHCRKIAWMVKHSPDWDYETQTLEQYLETVPEYPTDEQVKDFNHLWVEPFVPFKKEIPFEGDTAAQ*
JGI25926J51410_10066696	F014710	N/A	MTTDYKPIPTTFKKKGFTYTQLKREGARAIFQQTRPGSAVNNYEVVKIGRHNGYVMGGMSIEPAETYPGSSLWGITAWTCSSMDAAMQRYDALSS*