NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1004501

Scaffold JGI25926J51410_1004501


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1004501 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2895
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_10045012F102439N/AMGEVQRSLLADDELPPPKGKRRRMPERLSPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELTDRARAGDHTLVLDTVREVEYRAASLAEDIEAFMMPPDKLPSEPGSHARVEAMARRQLAKQQLFDG*
JGI25926J51410_10045013F070923GAGGVGDAPAGMLAHLRGRLRAEIGPRAVAAGRAFDEFCDGICRCWNSEHWTKLARTQPESQMLAVMDAKVLIAKVQEDVEAMWGDSPELRALYADVGREAVGVFARLWFESMANRTWMRQACREARRT*

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