Scaffold JGI25926J51410_1004438

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1004438
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F039497	Metagenome / Metatranscriptome	163	N
F082149	Metagenome / Metatranscriptome	113	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10044381	F024040	N/A	MNVYVSGHNWLAKVDLEDSIKKSDRYTEATTRAIESLLDDEEKRGVDLKVIDYDDYGLGVITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEQGL*
JGI25926J51410_10044383	F104483	GGAG	MNKKIIDKIDLVIEDINYLQELISFDTSDSSEHDLDSVVNLLAEIRGRVANEEDEVEKIDLKQL*
JGI25926J51410_10044387	F039497	AGCAG	MSEEDNFNCKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNVDEGGDEDEI*
JGI25926J51410_10044388	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGFKKEDDDKWFGFKFNLRTDISFESYEYGKIFSLTLFGFGLKVSSLIYE*